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Computational costs and limits of finite Gaussian-process regression

Remark

A real Gaussian process is a family whose finite evaluation vectors are multivariate normal. Let T be a set and let f=(ft)t∈T be a real Gaussian process with mean m(t)=Eft and symmetric positive-semidefinite covariance kernel k(s,t)=E[(fs−m(s))(ft−m(t))]; positive semidefinite means every finite Gram quadratic form is nonnegative. For n≥1 and a finite training list X=(xi)i=1n in T, set fX=(fxi), KXX=(k(xi,xj)), and let ε be centered Gaussian observation noise independent of f, with symmetric positive-semidefinite covariance R. Set Y=fX+ε and AX=KXX+R≻0. Write the dense Cholesky factorization as AX=LLT, where L is lower triangular with positive diagonal. In the scalar-operation model, where each addition, subtraction, multiplication, division, or square root counts as one operation, factorization costs n3/3+O(n2) operations. For a test input x∗∈T, define kx∗X=(k(x∗,xi))i=1n and kXx∗=kx∗XT. After factorization, the latent predictive variance k(x∗,x∗)−kx∗XAX−1kXx∗ requires O(n2) operations, where O(n2) denotes an asymptotic operation count as n grows. These are arithmetic counts, not accuracy guarantees. For an invertible real n×n matrix A, define its spectral condition number by κ2(A)=∥A∥2∥A−1∥2, where ∥A∥2=sup⁡∥x∥2=1∥Ax∥2 for x∈Rn. For 0<ϵ<1, Aϵ=diag⁡(1,ϵ) has condition number 1/ϵ, while E=diag⁡(0,−ϵ) has relative spectral-norm size ∥E∥2/∥Aϵ∥2=ϵ even though Aϵ+E is singular.

The negative log marginal likelihood need not be convex in a covariance hyperparameter. On the one-point set T={t}, take the centered Gaussian prior ft∼N(0,θ) with θ≥0, covariance kernel kθ(t,t)=θ, and independent observation noise ε∼N(0,1). For observation Y=ft+ε at y=0, the observed covariance is Aθ=1+θ>0 and the negative log marginal likelihood is L(θ)=12log⁡(1+θ)+12log⁡(2π). For every θ>0, its second derivative is L′′(θ)=−1/(2(1+θ)2)<0, so L is not convex on its parameter domain.

The finite Gaussian-process regression posterior formula uses Gaussian observation noise. Write ϕ(z)=(2π)−1/2e−z2/2 for the standard normal density and Φ(z)=∫−∞zϕ(t) dt for its cumulative distribution function. With one latent value z∼N(0,1) and one positive label, the logistic likelihood P(y=1∣z)=σ(z)=(1+e−z)−1 or probit likelihood P(y=1∣z)=Φ(z) gives a non-Gaussian posterior: the posterior log density has nonzero third derivative at z=log⁡3 for logistic and z=0 for probit. Both likelihoods lie in (0,1), so multiplying by the standard normal density gives a finite, positive normalizing integral. Finally, a Gaussian process specifies finite-dimensional laws but need not have continuous paths. A continuous modification means a process on the same probability space that agrees almost surely at each fixed input and has almost surely continuous sample paths. Under AC, on T=[0,1] the equality kernel k(s,t)=1 when s=t and 0 otherwise has no continuous modification.

Facts & Assumptions

Given: The finite regression model, dense arithmetic-operation model, scalar covariance-parameter example, logistic and probit one-coordinate likelihoods, and arbitrary-index Gaussian-process construction described in the Remark.

[A1]

The Axiom of Choice is used for arbitrary-index finite Gaussian laws and Kolmogorov extension. The Axiom of Choice

[F1]

For a positive-definite observed covariance, the Gaussian-process log marginal likelihood is −12(y−mX)TAX−1(y−mX)−12log⁡det⁡AX−n2log⁡(2π). Log marginal likelihood for a finite Gaussian-process regression model

[F2]

A mean and symmetric positive-semidefinite kernel under AC define a Gaussian process with the stated finite Gaussian marginals, but the construction asserts no sample-path continuity. A mean and positive-semidefinite kernel define a Gaussian process

[F3]

Every finite evaluation vector of a Gaussian process is multivariate normal with the corresponding mean and covariance. Gaussian process

[F4]

A multivariate-normal law with mean a and covariance Σ has characteristic function u↦exp⁡(iuTa−12uTΣu), which uniquely determines the law. Characteristic function of a multivariate normal law

[F5]

Dense Cholesky factorization costs n3/3+O(n2) scalar operations, and the two triangular solves cost 2n2+O(n). Cholesky solves Hermitian positive-definite systems and has about half the factorisation cost of LU

[F6]

The finite Gaussian-process posterior formula has covariance K∗∗−K∗XAX−1KX∗ under independent Gaussian observation noise and permits that covariance to be singular. Finite Gaussian-process regression posterior and predictive law

[F7]

For decreasing measurable sets under a finite measure, the measure of their intersection is the limit of their measures. Continuity from above when one set has finite measure

Proof

Given: The hypotheses and models in the Remark.

1.1F5F6givenalgebra

Cholesky factorization costs n3/3+O(n2) by [F5]. For one test point, the posterior variance formula requires solving AXu=kX∗ and forming k∗∗−k∗Xu. Factoring AX=LLT reduces this to two triangular solves, each with O(n2) cost by [F5], followed by an O(n) inner product. Therefore the variance calculation after factorization is O(n2).

1.2givenalgebra

The spectral norm of Aϵ=diag⁡(1,ϵ) is 1, its smallest singular value is ϵ, and therefore its spectral condition number is 1/ϵ. The perturbation E=diag⁡(0,−ϵ) has norm ϵ, so ∥E∥2/∥Aϵ∥2=ϵ, while Aϵ+E=diag⁡(1,0) is singular. Thus operation counts alone do not control sensitivity to finite-precision perturbations near singularity.

1.3F1givenalgebra

The scalar kernel kθ(t,t)=θ is positive semidefinite for θ≥0, and the observed covariance is Aθ=1+θ>0. Apply [F1] with m=0 and y=0 to get L(θ)=12log⁡(1+θ)+12log⁡(2π). Differentiating twice gives L′′(θ)=−1/(2(1+θ)2)<0 for every θ>0, so this negative log marginal likelihood is not convex on its parameter domain.

1.4givenalgebra

Write σ(z)=(1+e−z)−1; then 0<σ(z)<1 for all z, so ∫Rϕ(z)σ(z) dz is finite and positive. The logistic posterior is therefore a positive density whose log, up to an additive constant, is q(z)=−z2/2−log⁡(1+e−z). Differentiation gives q′′′(z)=−σ(z)(1−σ(z))(1−2σ(z)). At z=log⁡3 this equals 3/32≠0. A positive density on all of R cannot be a degenerate Gaussian; every nondegenerate univariate Gaussian log density is quadratic and has third derivative zero, so this posterior is not Gaussian.

1.5givenalgebra

Since 0<Φ(z)<1 for all z, the probit posterior normalizer ∫Rϕ(z)Φ(z) dz is finite and positive. Its positive log density, up to an additive constant, is q(z)=−z2/2+log⁡Φ(z). Put h=ϕ/Φ and c=h(0)=2/π. Since (log⁡Φ)′=h and h′=−zh−h2, differentiation yields (log⁡Φ)′′′(0)=h′′(0)=−c+2c3=c(4/π−1)≠0; the last inequality uses π<4. A positive density on all of R cannot be a degenerate Gaussian; every nondegenerate univariate Gaussian log density is quadratic and has third derivative zero, so this posterior is not Gaussian.

1.6A1F2givenconstructalgebra

Let D={ti:1≤i≤r} for any finite list t1,…,tr∈[0,1]. The equality kernel has Gram form ∑t∈D(∑i:ti=tai)2≥0. Therefore it is positive semidefinite, and by [A1, F2] it defines a cylinder-space Gaussian process with standard normal coordinates and covariance 1s=t.

2.1F3F4step 1.6algebra

For any finite list of distinct inputs in [0,1], [F3] gives a centered Gaussian vector with covariance identity. By [F4] its characteristic function is exp⁡(−12∑iui2), which factors into the univariate standard-normal characteristic functions; uniqueness therefore gives independent standard-normal coordinates.

3.1F2F7step 2.1givenalgebra

Let qj=1/(j+2). If a continuous modification G existed, the equalities Gqj=fqj for all j and G0=f0 would hold simultaneously almost surely, since there are countably many coordinates. Let E0={∣f0∣<1}, which has positive probability, and Ej={∣fqj∣>2}, each of probability p>0 by [F2]. The finite-coordinate independence from step 2.1 gives Pr⁡(E0∩⋂j=NMEjc)=Pr⁡(E0)(1−p)M−N+1. By [F7], letting M→∞ gives Pr⁡(E0∩⋂j=N∞Ejc)=0 for each N; the countable union over N then shows E0 and infinitely many Ej occur together with probability Pr⁡(E0)>0. On that event ∣G0∣<1 while ∣Gqj∣>2 infinitely often, contradicting continuity at 0. No continuous modification exists.

4.1F6step 1.4step 1.5∎

The scope distinction in [F6] concerns a Gaussian observation likelihood; the explicit logistic and probit posterior calculations in steps 1.4 and 1.5 have nonzero third derivatives and are not Gaussian. Thus the exact finite Gaussian regression formula does not give an exact Gaussian posterior for those classification models.

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